Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor p-like protein yeip | F126LOC_RS12390 | Not Available | Positive | 2826309 - 2826881 | 21397.7 |
| cobw family gtp-binding protein | F126LOC_RS12395 | Not Available | Positive | 2826968 - 2827969 | 36757.1 |
| phosphatase pap2 family protein | F126LOC_RS12400 | Not Available | Positive | 2828008 - 2828709 | 25984.2 |
| bifunctional murein dd-endopeptidase/murein ld-carboxypeptidase | F126LOC_RS12405 | Not Available | Positive | 2829032 - 2829613 | 21781.0 |
| extracellular solute-binding protein | F126LOC_RS12410 | Not Available | Positive | 2830004 - 2831812 | 69058.5 |
| microcin c abc transporter permease yejb | F126LOC_RS12415 | Not Available | Positive | 2831822 - 2832919 | 40635.1 |
| abc transporter permease | F126LOC_RS12420 | Not Available | Positive | 2832916 - 2833941 | 38291.9 |
| microcin c abc transporter atp-binding protein yejf | F126LOC_RS12425 | Not Available | Positive | 2833943 - 2835559 | 59890.8 |
| yejg family protein | F126LOC_RS12430 | Not Available | Negative | 2835600 - 2835944 | 12877.4 |
| bcr/cfla family multidrug efflux mfs transporter | F126LOC_RS12435 | Not Available | Negative | 2836327 - 2837517 | 43204.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
