Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | F126LOC_RS12340 | Not Available | Negative | 2813200 - 2815329 | 77159.9 |
| amino acid permease | F126LOC_RS12345 | Not Available | Negative | 2815672 - 2817147 | 53931.1 |
| dna-binding transcriptional regulator yeie | F126LOC_RS12350 | Not Available | Negative | 2817283 - 2818155 | 32365.3 |
| yeih family protein | F126LOC_RS12355 | Not Available | Positive | 2818276 - 2819349 | 38502.4 |
| deoxyribonuclease iv | F126LOC_RS12360 | Not Available | Positive | 2819440 - 2820285 | 31025.6 |
| pts fructose transporter subunit iibc | F126LOC_RS12365 | Not Available | Negative | 2820395 - 2822086 | 57397.4 |
| 1-phosphofructokinase | F126LOC_RS12370 | Not Available | Negative | 2822105 - 2823043 | 33553.2 |
| fused pts fructose transporter subunit iia/hpr protein | F126LOC_RS12375 | Not Available | Negative | 2823040 - 2824173 | 39509.8 |
| sugar efflux transporter setb | F126LOC_RS12380 | Not Available | Positive | 2824508 - 2825686 | 42606.6 |
| ykgj family cysteine cluster protein | F126LOC_RS12385 | Not Available | Negative | 2825697 - 2825951 | 9094.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
