Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyl-accepting chemotaxis protein | F126LOC_RS12290 | Not Available | Negative | 2800749 - 2802428 | 59960.3 |
| putrescine utilization regulator ptrr | F126LOC_RS12295 | Not Available | Positive | 2803131 - 2804021 | 32484.1 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | F126LOC_RS12300 | Not Available | Positive | 2804135 - 2805256 | 39462.8 |
| s-formylglutathione hydrolase | F126LOC_RS12305 | Not Available | Positive | 2805299 - 2806144 | 31794.2 |
| glutathione s-transferase family protein | F126LOC_RS12310 | Not Available | Positive | 2806327 - 2806971 | 24361.7 |
| ktsc domain-containing protein | F126LOC_RS12315 | Not Available | Positive | 2807184 - 2807396 | 8238.83 |
| oxidoreductase | F126LOC_RS12320 | Not Available | Negative | 2807506 - 2808594 | 38566.4 |
| sugar abc transporter atp-binding protein | F126LOC_RS12325 | Not Available | Positive | 2808861 - 2810372 | 55209.5 |
| abc transporter permease | F126LOC_RS12330 | Not Available | Positive | 2810444 - 2811364 | 31879.2 |
| 2-hydroxyacid dehydrogenase | F126LOC_RS12335 | Not Available | Negative | 2811785 - 2812774 | 36032.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
