Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS12240 | Not Available | Negative | 2790266 - 2790700 | 16373.7 |
| hypothetical protein | F126LOC_RS12245 | Not Available | Negative | 2790789 - 2791454 | 26059.9 |
| recombinase family protein | F126LOC_RS12250 | Not Available | Negative | 2791647 - 2792222 | 21398.0 |
| restriction endonuclease | F126LOC_RS12255 | Not Available | Positive | 2792437 - 2794704 | 88597.9 |
| is1 family transposase | F126LOC_RS12260 | Not Available | Positive | 2794786 - 2795480 | 26416.0 |
| recombinase family protein | F126LOC_RS12265 | Not Available | Negative | 2795477 - 2796145 | 25072.0 |
| 30s ribosomal protein s12 methylthiotransferase rimo | F126LOC_RS12270 | Not Available | Positive | 2796189 - 2797496 | 48662.6 |
| outer membrane permeability protein sana | F126LOC_RS12275 | Not Available | Positive | 2797679 - 2798458 | 29244.5 |
| duf418 domain-containing protein yeib | F126LOC_RS12280 | Not Available | Negative | 2798468 - 2799643 | 43809.5 |
| gtp cyclohydrolase i fole | F126LOC_RS12285 | Not Available | Negative | 2799766 - 2800428 | 24571.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
