Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine abc transporter permease poti | F126LOC_RS12140 | Not Available | Negative | 2770109 - 2770954 | 30861.9 |
| putrescine abc transporter permease poth | F126LOC_RS12145 | Not Available | Negative | 2770951 - 2771916 | 36260.6 |
| putrescine abc transporter atp-binding subunit potg | F126LOC_RS12150 | Not Available | Negative | 2771931 - 2773064 | 42048.2 |
| spermidine/putrescine abc transporter substrate-binding protein potf | F126LOC_RS12155 | Not Available | Negative | 2773267 - 2774376 | 40613.5 |
| ybjn domain-containing protein | F126LOC_RS12160 | Not Available | Negative | 2774748 - 2775227 | 17648.3 |
| 30s ribosomal protein s6--l-glutamate ligase | F126LOC_RS12165 | Not Available | Negative | 2775494 - 2776405 | 32843.9 |
| oxygen-insensitive nadph nitroreductase | F126LOC_RS12170 | Not Available | Negative | 2776422 - 2777141 | 26914.5 |
| grxa family glutaredoxin | F126LOC_RS12175 | Not Available | Positive | 2777450 - 2777716 | 9953.85 |
| inner membrane protein ybjm | F126LOC_RS12180 | Not Available | Negative | 2777785 - 2778156 | 13731.5 |
| aspartate:alanine antiporter | F126LOC_RS12185 | Not Available | Positive | 2778533 - 2780221 | 60535.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
