Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2867 domain-containing protein | F126LOC_RS12090 | Not Available | Positive | 2761170 - 2762606 | 53195.6 |
| n-acetylmuramoyl-l-alanine amidase | F126LOC_RS12095 | Not Available | Negative | 2762603 - 2763430 | 30713.4 |
| heavy metal-binding domain-containing protein | F126LOC_RS12100 | Not Available | Negative | 2763492 - 2763815 | 11593.9 |
| arginine abc transporter atp-binding protein artp | F126LOC_RS12105 | Not Available | Positive | 2764022 - 2764750 | 26910.5 |
| arginine abc transporter substrate-binding protein | F126LOC_RS12110 | Not Available | Positive | 2764771 - 2765502 | 27019.1 |
| arginine abc transporter permease artq | F126LOC_RS12115 | Not Available | Positive | 2765514 - 2766230 | 26339.2 |
| arginine abc transporter permease artm | F126LOC_RS12120 | Not Available | Positive | 2766230 - 2766898 | 24693.0 |
| arginine abc transporter substrate-binding protein | F126LOC_RS12125 | Not Available | Positive | 2767097 - 2767828 | 26683.8 |
| 23s rrna (uracil(747)-c(5))-methyltransferase rlmc | F126LOC_RS12130 | Not Available | Negative | 2768190 - 2769323 | 42200.1 |
| ybjo family protein | F126LOC_RS12135 | Not Available | Negative | 2769449 - 2769901 | 16591.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
