Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar kinase | F126LOC_RS00425 | Not Available | Negative | 106195 - 107127 | 34146.4 |
| inner membrane protein yhjd | F126LOC_RS00430 | Not Available | Negative | 107275 - 108291 | 37064.2 |
| mfs transporter | F126LOC_RS00435 | Not Available | Positive | 108421 - 109617 | 41530.1 |
| dcrb family lipoprotein | F126LOC_RS00440 | Not Available | Negative | 109666 - 110232 | 20018.8 |
| 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter | F126LOC_RS00445 | Not Available | Negative | 110419 - 111096 | 25718.7 |
| sulfurtransferase tusa | F126LOC_RS00450 | Not Available | Positive | 111330 - 111572 | 9184.19 |
| zinc/cadmium/mercury/lead-transporting atpase | F126LOC_RS00455 | Not Available | Negative | 111632 - 113995 | 83051.0 |
| lysoplasmalogenase | F126LOC_RS00460 | Not Available | Negative | 114090 - 114719 | 23738.8 |
| duf1820 family protein | F126LOC_RS00465 | Not Available | Positive | 114911 - 115231 | 11841.1 |
| duf1145 family protein | F126LOC_RS00470 | Not Available | Negative | 115321 - 115596 | 10403.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
