Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-1 | F126LOC_RS12040 | Not Available | Positive | 2749144 - 2749362 | 8236.07 |
| plp-dependent aminotransferase family protein | F126LOC_RS12045 | Not Available | Positive | 2749513 - 2750961 | 53010.7 |
| carboxymuconolactone decarboxylase family protein | F126LOC_RS12050 | Not Available | Negative | 2750958 - 2751437 | 18109.8 |
| atp-dependent clp protease atp-binding subunit clpa | F126LOC_RS12055 | Not Available | Negative | 2751674 - 2753947 | 84134.7 |
| atp-dependent clp protease adapter clps | F126LOC_RS12060 | Not Available | Negative | 2753977 - 2754297 | 12164.4 |
| cold shock-like protein cspd | F126LOC_RS12065 | Not Available | Positive | 2754720 - 2754941 | 7886.34 |
| atp-dependent endonuclease | F126LOC_RS12070 | Not Available | Negative | 2755056 - 2756720 | 63485.6 |
| lysine exporter lyso family protein | F126LOC_RS12075 | Not Available | Positive | 2757034 - 2757933 | 32409.1 |
| hydroxylamine reductase | F126LOC_RS12080 | Not Available | Positive | 2758122 - 2759774 | 60037.1 |
| nadh oxidoreductase | F126LOC_RS12085 | Not Available | Positive | 2759914 - 2760939 | 37288.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
