Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | F126LOC_RS11990 | Not Available | Negative | 2733815 - 2734969 | 41681.9 |
| serine--trna ligase | F126LOC_RS11995 | Not Available | Negative | 2735291 - 2736586 | 48714.2 |
| replication-associated recombination protein a | F126LOC_RS12000 | Not Available | Negative | 2736690 - 2738033 | 49358.6 |
| outer membrane lipoprotein chaperone lola | F126LOC_RS12005 | Not Available | Negative | 2738041 - 2738652 | 22482.2 |
| dna translocase ftsk 4tm domain-containing protein | F126LOC_RS12010 | Not Available | Negative | 2738902 - 2742390 | 126461.0 |
| leucine-responsive transcriptional regulator lrp | F126LOC_RS12015 | Not Available | Negative | 2742505 - 2742999 | 18857.9 |
| thioredoxin-disulfide reductase | F126LOC_RS12020 | Not Available | Positive | 2743584 - 2744546 | 34511.1 |
| heme abc transporter permease/atp-binding protein cydd | F126LOC_RS12025 | Not Available | Positive | 2744784 - 2746550 | 64863.2 |
| heme abc transporter atp-binding protein/permease cydc | F126LOC_RS12030 | Not Available | Positive | 2746550 - 2748292 | 63640.2 |
| leucyl/phenylalanyl-trna--protein transferase | F126LOC_RS12035 | Not Available | Positive | 2748327 - 2749031 | 26314.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
