Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | F126LOC_RS11940 | Not Available | Negative | 2719284 - 2720573 | 46693.1 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | F126LOC_RS11945 | Not Available | Negative | 2720655 - 2721740 | 40233.1 |
| 30s ribosomal protein s12 methylthiotransferase accessory factor ycao | F126LOC_RS11950 | Not Available | Positive | 2722070 - 2723833 | 65703.9 |
| formate transporter foca | F126LOC_RS11955 | Not Available | Positive | 2724272 - 2725129 | 30796.5 |
| formate c-acetyltransferase | F126LOC_RS11960 | Not Available | Positive | 2725187 - 2727469 | 84889.1 |
| pyruvate formate lyase 1-activating protein | F126LOC_RS11965 | Not Available | Positive | 2727739 - 2728479 | 28144.8 |
| hydantoinase/oxoprolinase family protein | F126LOC_RS11970 | Not Available | Negative | 2728568 - 2730136 | 56085.3 |
| duf917 domain-containing protein | F126LOC_RS11975 | Not Available | Negative | 2730147 - 2731256 | 39715.0 |
| cytosine permease | F126LOC_RS11980 | Not Available | Negative | 2731283 - 2732614 | 47583.0 |
| lysr family transcriptional regulator | F126LOC_RS11985 | Not Available | Positive | 2732888 - 2733829 | 34814.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
