Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol dehydrogenase | F126LOC_RS11890 | Not Available | Positive | 2709863 - 2711191 | 46684.5 |
| histidinol-phosphate transaminase | F126LOC_RS11895 | Not Available | Positive | 2711188 - 2712261 | 39350.3 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | F126LOC_RS11900 | Not Available | Positive | 2712277 - 2713344 | 39763.7 |
| imidazole glycerol phosphate synthase subunit hish | F126LOC_RS11905 | Not Available | Positive | 2713344 - 2713934 | 21285.8 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | F126LOC_RS11910 | Not Available | Positive | 2713941 - 2714678 | 26336.5 |
| imidazole glycerol phosphate synthase subunit hisf | F126LOC_RS11915 | Not Available | Positive | 2714660 - 2715436 | 28415.9 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | F126LOC_RS11920 | Not Available | Positive | 2715499 - 2716062 | 20715.6 |
| integration host factor subunit beta | F126LOC_RS11925 | Not Available | Negative | 2716222 - 2716506 | 10581.7 |
| 30s ribosomal protein s1 | F126LOC_RS11930 | Not Available | Negative | 2716596 - 2718269 | 61182.6 |
| (d)cmp kinase | F126LOC_RS11935 | Not Available | Negative | 2718386 - 2719063 | 24454.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
