Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| [citrate (pro-3s)-lyase] ligase | F126LOC_RS11840 | Not Available | Negative | 2696521 - 2697585 | 40341.5 |
| fumarylacetoacetate hydrolase family protein | F126LOC_RS11845 | Not Available | Negative | 2697673 - 2698557 | 31903.9 |
| 2-hydroxycarboxylate transporter family protein | F126LOC_RS11850 | Not Available | Negative | 2698673 - 2700043 | 47939.4 |
| sensor histidine kinase | F126LOC_RS11855 | Not Available | Positive | 2700463 - 2702067 | 59810.7 |
| response regulator | F126LOC_RS11860 | Not Available | Positive | 2702159 - 2702860 | 26592.9 |
| methyl-accepting chemotaxis protein | F126LOC_RS11865 | Not Available | Positive | 2703322 - 2705256 | 69584.3 |
| methyl-accepting chemotaxis protein | F126LOC_RS11870 | Not Available | Positive | 2705591 - 2707543 | 70553.4 |
| sdr family oxidoreductase | F126LOC_RS11875 | Not Available | Negative | 2707646 - 2708482 | 30104.0 |
| his operon leader peptide | F126LOC_RS11880 | Not Available | Positive | 2708764 - 2708811 | 1915.24 |
| atp phosphoribosyltransferase | F126LOC_RS11885 | Not Available | Positive | 2708958 - 2709857 | 33552.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
