Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid aminotransferase | F126LOC_RS11695 | Not Available | Positive | 2660874 - 2662064 | 43157.1 |
| mbl fold metallo-hydrolase | F126LOC_RS11700 | Not Available | Negative | 2662136 - 2662783 | 23298.7 |
| ycbk family protein | F126LOC_RS11705 | Not Available | Negative | 2662865 - 2663413 | 20754.0 |
| l,d-transpeptidase | F126LOC_RS11710 | Not Available | Negative | 2663592 - 2665328 | 64548.2 |
| chromosome partition protein mukb | F126LOC_RS11715 | Not Available | Negative | 2665729 - 2670168 | 169651.0 |
| chromosome partition protein muke | F126LOC_RS11720 | Not Available | Negative | 2670336 - 2671058 | 27535.6 |
| chromosome partition protein mukf | F126LOC_RS11725 | Not Available | Negative | 2671039 - 2672364 | 50637.7 |
| trna uridine 5-oxyacetic acid(34) methyltransferase cmom | F126LOC_RS11730 | Not Available | Negative | 2672361 - 2673146 | 29466.8 |
| envelope biogenesis factor elyc | F126LOC_RS11735 | Not Available | Positive | 2673314 - 2674162 | 30727.1 |
| ycbj family phosphotransferase | F126LOC_RS11740 | Not Available | Negative | 2674114 - 2675007 | 34604.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
