Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane integrity-associated transporter subunit pqia | F126LOC_RS11645 | Not Available | Negative | 2644332 - 2645576 | 45852.2 |
| abc transporter atp-binding protein | F126LOC_RS11650 | Not Available | Negative | 2645804 - 2647732 | 71892.6 |
| bifunctional 23s rrna (guanine(2069)-n(7))-methyltransferase rlmk/23s rrna (guanine(2445)-n(2))-methyltransferase rlml | F126LOC_RS11655 | Not Available | Negative | 2647736 - 2649853 | 79204.5 |
| ycbx family protein | F126LOC_RS11660 | Not Available | Positive | 2649963 - 2651066 | 40402.5 |
| cell division protein zapc | F126LOC_RS11665 | Not Available | Negative | 2651139 - 2651726 | 22026.5 |
| quinone-dependent dihydroorotate dehydrogenase | F126LOC_RS11670 | Not Available | Negative | 2651928 - 2652938 | 36843.9 |
| aminopeptidase n | F126LOC_RS11675 | Not Available | Negative | 2653307 - 2655922 | 98937.3 |
| nicotinate phosphoribosyltransferase | F126LOC_RS11680 | Not Available | Positive | 2656146 - 2657351 | 46091.1 |
| asparagine--trna ligase | F126LOC_RS11685 | Not Available | Positive | 2657737 - 2659137 | 52370.6 |
| porin | F126LOC_RS11690 | Not Available | Positive | 2659433 - 2660557 | 40232.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
