Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxy-s-adenosyl-l-methionine synthase cmoa | F126LOC_RS11545 | Not Available | Positive | 2623448 - 2624191 | 27798.6 |
| trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmob | F126LOC_RS11550 | Not Available | Positive | 2624188 - 2625174 | 37315.0 |
| copper homeostasis protein cutc | F126LOC_RS11555 | Not Available | Negative | 2625331 - 2626089 | 27649.3 |
| voc family protein | F126LOC_RS11560 | Not Available | Negative | 2626499 - 2627047 | 20278.3 |
| arginine--trna ligase | F126LOC_RS11565 | Not Available | Positive | 2627705 - 2629435 | 64286.0 |
| murein biosynthesis integral membrane protein murj | F126LOC_RS11570 | Not Available | Negative | 2629652 - 2631187 | 55894.5 |
| gfo/idh/moca family protein | F126LOC_RS11575 | Not Available | Negative | 2631315 - 2632280 | 35760.6 |
| yceh family protein | F126LOC_RS11580 | Not Available | Negative | 2632309 - 2632944 | 23691.1 |
| ribosomal protein s5-alanine n-acetyltransferase | F126LOC_RS11585 | Not Available | Negative | 2632954 - 2633538 | 22782.1 |
| multidrug efflux mfs transporter mdth | F126LOC_RS11590 | Not Available | Positive | 2633855 - 2635060 | 44317.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
