Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate porin | F126LOC_RS11495 | Not Available | Positive | 2613325 - 2614704 | 50393.5 |
| holliday junction branch migration dna helicase ruvb | F126LOC_RS11500 | Not Available | Negative | 2614775 - 2615785 | 37313.1 |
| holliday junction branch migration protein ruva | F126LOC_RS11505 | Not Available | Negative | 2615793 - 2616410 | 22376.3 |
| crossover junction endodeoxyribonuclease ruvc | F126LOC_RS11510 | Not Available | Negative | 2616502 - 2617023 | 18581.9 |
| yebc/pmpr family dna-binding transcriptional regulator | F126LOC_RS11515 | Not Available | Negative | 2617121 - 2617864 | 26420.9 |
| dihydroneopterin triphosphate diphosphatase | F126LOC_RS11520 | Not Available | Negative | 2617888 - 2618331 | 17071.2 |
| aspartate--trna ligase | F126LOC_RS11525 | Not Available | Negative | 2618333 - 2620129 | 66705.0 |
| eal and hdod domain-containing protein | F126LOC_RS11530 | Not Available | Positive | 2620607 - 2621824 | 47066.9 |
| duf72 domain-containing protein | F126LOC_RS11535 | Not Available | Positive | 2621916 - 2622728 | 31279.2 |
| mapeg family protein | F126LOC_RS11540 | Not Available | Positive | 2622884 - 2623279 | 14974.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
