Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murr/rpir family transcriptional regulator | F126LOC_RS11445 | Not Available | Positive | 2602032 - 2602901 | 32222.8 |
| pyruvate kinase | F126LOC_RS11450 | Not Available | Positive | 2603159 - 2604601 | 51559.7 |
| lauroyl-kdo(2)-lipid iv(a) myristoyltransferase | F126LOC_RS11455 | Not Available | Negative | 2604756 - 2605727 | 37474.6 |
| murein dd-endopeptidase mepm | F126LOC_RS11460 | Not Available | Negative | 2605915 - 2607237 | 49392.9 |
| zinc abc transporter substrate-binding protein znua | F126LOC_RS11465 | Not Available | Negative | 2607250 - 2608251 | 36461.3 |
| zinc abc transporter atp-binding protein znuc | F126LOC_RS11470 | Not Available | Positive | 2608328 - 2609086 | 27712.1 |
| zinc abc transporter permease subunit znub | F126LOC_RS11475 | Not Available | Positive | 2609083 - 2609868 | 27796.5 |
| laci family dna-binding transcriptional regulator | F126LOC_RS11480 | Not Available | Negative | 2609939 - 2610898 | 34923.2 |
| pts sugar transporter subunit iic | F126LOC_RS11485 | Not Available | Positive | 2611360 - 2612688 | 48411.5 |
| pts lactose/cellobiose transporter subunit iia | F126LOC_RS11490 | Not Available | Positive | 2612854 - 2613159 | 11451.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
