Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS11395 | Not Available | Negative | 2592098 - 2592244 | 5421.96 |
| excalibur calcium-binding domain-containing protein | F126LOC_RS11400 | Not Available | Positive | 2592501 - 2592809 | 12033.1 |
| cold shock protein cspg | F126LOC_RS11405 | Not Available | Negative | 2593035 - 2593247 | 7538.89 |
| yeby family protein | F126LOC_RS11410 | Not Available | Negative | 2593777 - 2594133 | 13218.1 |
| non-heme ferritin | F126LOC_RS11415 | Not Available | Negative | 2594418 - 2594924 | 19168.8 |
| dna polymerase iii subunit theta | F126LOC_RS11420 | Not Available | Positive | 2595297 - 2595527 | 9169.98 |
| s9 family peptidase | F126LOC_RS11425 | Not Available | Negative | 2595875 - 2597926 | 79098.7 |
| formate-dependent phosphoribosylglycinamide formyltransferase | F126LOC_RS11430 | Not Available | Positive | 2598127 - 2599305 | 42276.8 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | F126LOC_RS11435 | Not Available | Negative | 2599360 - 2600001 | 22267.2 |
| glucose-6-phosphate dehydrogenase | F126LOC_RS11440 | Not Available | Negative | 2600173 - 2601648 | 56032.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
