Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxy terminal-processing peptidase | F126LOC_RS11345 | Not Available | Negative | 2579996 - 2582011 | 75181.8 |
| rna chaperone proq | F126LOC_RS11350 | Not Available | Negative | 2582031 - 2582774 | 27419.3 |
| gaf domain-containing protein | F126LOC_RS11355 | Not Available | Negative | 2582859 - 2583365 | 18351.9 |
| membrane integrity lipid transport subunit yebs | F126LOC_RS11360 | Not Available | Positive | 2583673 - 2584953 | 47688.0 |
| pqib family protein | F126LOC_RS11365 | Not Available | Positive | 2584956 - 2587595 | 95907.6 |
| 16s rrna (cytosine(1407)-c(5))-methyltransferase rsmf | F126LOC_RS11370 | Not Available | Positive | 2587742 - 2589196 | 53900.2 |
| yebw family protein | F126LOC_RS11375 | Not Available | Positive | 2589324 - 2589515 | 7200.56 |
| extensin family protein | F126LOC_RS11380 | Not Available | Negative | 2589535 - 2590230 | 25250.1 |
| malate/lactate/ureidoglycolate dehydrogenase | F126LOC_RS11385 | Not Available | Negative | 2590270 - 2591337 | 37811.5 |
| hypothetical protein | F126LOC_RS11390 | Not Available | Positive | 2591573 - 2592055 | 17612.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
