Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase t | F126LOC_RS11295 | Not Available | Negative | 2569696 - 2570928 | 45081.8 |
| spermidine/putrescine abc transporter atp-binding protein pota | F126LOC_RS11300 | Not Available | Positive | 2571288 - 2572403 | 41943.3 |
| spermidine/putrescine abc transporter permease potb | F126LOC_RS11305 | Not Available | Positive | 2572387 - 2573247 | 32413.4 |
| spermidine/putrescine abc transporter permease potc | F126LOC_RS11310 | Not Available | Positive | 2573244 - 2574020 | 28620.2 |
| spermidine/putrescine abc transporter substrate-binding protein potd | F126LOC_RS11315 | Not Available | Positive | 2574121 - 2575164 | 38753.0 |
| methylated-dna--[protein]-cysteine s-methyltransferase | F126LOC_RS11320 | Not Available | Negative | 2575249 - 2575755 | 18293.0 |
| mfs transporter | F126LOC_RS11325 | Not Available | Negative | 2575875 - 2577101 | 43395.9 |
| arac family transcriptional regulator | F126LOC_RS11330 | Not Available | Positive | 2577245 - 2578069 | 31250.3 |
| ybhb/ybcl family raf kinase inhibitor-like protein | F126LOC_RS11335 | Not Available | Positive | 2578327 - 2578959 | 22581.3 |
| helix-turn-helix transcriptional regulator | F126LOC_RS11340 | Not Available | Positive | 2579004 - 2579870 | 32404.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
