Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s binding protein | F126LOC_RS11245 | Not Available | Positive | 2558955 - 2560064 | 41661.9 |
| nadp-dependent isocitrate dehydrogenase | F126LOC_RS11250 | Not Available | Negative | 2560116 - 2561369 | 45893.4 |
| 23s rrna pseudouridine(2457) synthase rlue | F126LOC_RS11255 | Not Available | Positive | 2561500 - 2562126 | 23865.9 |
| nudix hydrolase | F126LOC_RS11260 | Not Available | Positive | 2562119 - 2562565 | 17139.4 |
| trna 2-thiouridine(34) synthase mnma | F126LOC_RS11265 | Not Available | Positive | 2562710 - 2563816 | 41183.7 |
| high frequency lysogenization protein hfld | F126LOC_RS11270 | Not Available | Positive | 2563819 - 2564457 | 22740.7 |
| adenylosuccinate lyase | F126LOC_RS11275 | Not Available | Positive | 2564605 - 2565975 | 51445.5 |
| two-component system response regulator phop | F126LOC_RS11280 | Not Available | Positive | 2566216 - 2566908 | 25995.6 |
| two-component system sensor histidine kinase phoq | F126LOC_RS11285 | Not Available | Positive | 2566905 - 2568359 | 54793.2 |
| cupin domain-containing protein | F126LOC_RS11290 | Not Available | Positive | 2568496 - 2569617 | 42414.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
