Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protease htpx | F126LOC_RS11195 | Not Available | Negative | 2546134 - 2547015 | 32073.3 |
| glycerophosphodiester phosphodiesterase family protein | F126LOC_RS11200 | Not Available | Negative | 2547179 - 2548027 | 30996.0 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | F126LOC_RS11205 | Not Available | Negative | 2548058 - 2549359 | 48300.4 |
| ofa family mfs transporter | F126LOC_RS11210 | Not Available | Negative | 2549647 - 2550870 | 43431.4 |
| lytr/algr family response regulator transcription factor | F126LOC_RS11215 | Not Available | Negative | 2551055 - 2551804 | 29293.3 |
| sensor histidine kinase | F126LOC_RS11220 | Not Available | Negative | 2551801 - 2553546 | 64461.0 |
| eal domain-containing protein | F126LOC_RS11225 | Not Available | Negative | 2553709 - 2555877 | 80567.4 |
| hypothetical protein | F126LOC_RS11230 | Not Available | Negative | 2556270 - 2556527 | 9510.12 |
| xre family transcriptional regulator | F126LOC_RS11235 | Not Available | Positive | 2556930 - 2557664 | 26835.9 |
| mor transcription activator family protein | F126LOC_RS11240 | Not Available | Positive | 2558142 - 2558492 | 13363.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
