Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase subunit alpha | F126LOC_RS11145 | Not Available | Negative | 2536834 - 2537817 | 37155.4 |
| phest operon leader peptide phem | F126LOC_RS11150 | Not Available | Negative | 2538001 - 2538045 | 1732.1 |
| 50s ribosomal protein l20 | F126LOC_RS11155 | Not Available | Negative | 2538136 - 2538492 | 13483.7 |
| 50s ribosomal protein l35 | F126LOC_RS11160 | Not Available | Negative | 2538536 - 2538733 | 7265.29 |
| translation initiation factor if-3 | F126LOC_RS11165 | Not Available | Negative | 2538829 - 2539371 | 20551.1 |
| threonine--trna ligase | F126LOC_RS11170 | Not Available | Negative | 2539374 - 2541302 | 73755.1 |
| amino acid permease | F126LOC_RS11175 | Not Available | Negative | 2541558 - 2542958 | 51051.9 |
| yebo family protein | F126LOC_RS11180 | Not Available | Negative | 2543086 - 2543349 | 10056.4 |
| dna-binding transcriptional regulator kdgr | F126LOC_RS11185 | Not Available | Negative | 2543607 - 2544398 | 29673.4 |
| oligogalacturonate lyase | F126LOC_RS11190 | Not Available | Negative | 2544613 - 2545779 | 44441.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
