Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pectin acetylesterase paex | F126LOC_RS11095 | Not Available | Positive | 2525984 - 2526937 | 34421.4 |
| alpha/beta hydrolase | F126LOC_RS11100 | Not Available | Positive | 2527018 - 2527524 | 18833.3 |
| l-cystine transporter | F126LOC_RS11105 | Not Available | Positive | 2527765 - 2529159 | 48843.1 |
| osmotically-inducible lipoprotein osme | F126LOC_RS11110 | Not Available | Negative | 2529308 - 2529637 | 11891.2 |
| ammonia-dependent nad(+) synthetase | F126LOC_RS11115 | Not Available | Positive | 2529863 - 2530687 | 30311.9 |
| aromatic amino acid dmt transporter yddg | F126LOC_RS11120 | Not Available | Positive | 2530771 - 2531658 | 32269.8 |
| abc transporter atp-binding protein | F126LOC_RS11125 | Not Available | Positive | 2531790 - 2533508 | 63352.2 |
| nitrous oxide-stimulated promoter family protein | F126LOC_RS11130 | Not Available | Positive | 2533645 - 2534070 | 16351.8 |
| integration host factor subunit alpha | F126LOC_RS11135 | Not Available | Negative | 2534131 - 2534427 | 11239.5 |
| phenylalanine--trna ligase subunit beta | F126LOC_RS11140 | Not Available | Negative | 2534432 - 2536819 | 86642.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
