Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | F126LOC_RS00325 | Not Available | Negative | 71015 - 71533 | 19048.5 |
| valine--pyruvate transaminase | F126LOC_RS00330 | Not Available | Negative | 72072 - 73322 | 46440.4 |
| aldose 1-epimerase family protein | F126LOC_RS00335 | Not Available | Positive | 73715 - 74923 | 44386.7 |
| eama family transporter | F126LOC_RS00340 | Not Available | Positive | 75086 - 75997 | 32635.6 |
| gamma-glutamyltransferase | F126LOC_RS00345 | Not Available | Positive | 76211 - 77989 | 62679.7 |
| zinc abc transporter substrate-binding protein | F126LOC_RS00350 | Not Available | Negative | 78106 - 78435 | 12935.6 |
| duf637 domain-containing protein | F126LOC_RS00355 | Not Available | Negative | 78437 - 83602 | 181140.0 |
| shlb/fhac/hecb family hemolysin secretion/activation protein | F126LOC_RS00360 | Not Available | Negative | 83642 - 85324 | 61903.0 |
| cellulose synthase complex outer membrane protein bcsc | F126LOC_RS00365 | Not Available | Negative | 85583 - 89152 | 132110.0 |
| cellulose synthase complex periplasmic endoglucanase bcsz | F126LOC_RS00370 | Not Available | Negative | 90145 - 91260 | 41627.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
