Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hexitol phosphatase hxpb | F126LOC_RS11045 | Not Available | Positive | 2516042 - 2516707 | 24977.2 |
| cupin domain-containing protein | F126LOC_RS11050 | Not Available | Negative | 2516803 - 2517135 | 12489.0 |
| alpha/beta hydrolase | F126LOC_RS11055 | Not Available | Positive | 2517491 - 2517652 | 6171.4 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | F126LOC_RS11060 | Not Available | Positive | 2517736 - 2518497 | 27252.9 |
| pectate disaccharide-lyase pelw | F126LOC_RS11065 | Not Available | Positive | 2518770 - 2520401 | 62172.0 |
| carbohydrate abc transporter permease | F126LOC_RS11070 | Not Available | Positive | 2520448 - 2521338 | 33432.1 |
| carbohydrate abc transporter permease | F126LOC_RS11075 | Not Available | Positive | 2521331 - 2522236 | 34168.4 |
| abc transporter atp-binding protein | F126LOC_RS11080 | Not Available | Positive | 2522250 - 2523377 | 41832.0 |
| abc transporter substrate-binding protein | F126LOC_RS11085 | Not Available | Positive | 2523393 - 2524685 | 48235.6 |
| oligogalacturonate-specific porin kdgm family protein | F126LOC_RS11090 | Not Available | Positive | 2524933 - 2525649 | 27344.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
