Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese efflux pump mntp | F126LOC_RS10995 | Not Available | Positive | 2507298 - 2507870 | 20269.7 |
| 23s rrna (guanine(745)-n(1))-methyltransferase | F126LOC_RS11000 | Not Available | Negative | 2508060 - 2508890 | 30809.8 |
| transcription antiterminator/rna stability regulator cspe | F126LOC_RS11005 | Not Available | Negative | 2509019 - 2509228 | 7418.76 |
| duf2627 domain-containing protein | F126LOC_RS11010 | Not Available | Negative | 2509270 - 2509386 | 3999.57 |
| metal abc transporter substrate-binding protein | F126LOC_RS11015 | Not Available | Positive | 2510336 - 2511250 | 33751.4 |
| manganese/iron abc transporter atp-binding protein | F126LOC_RS11020 | Not Available | Positive | 2511247 - 2512137 | 32226.6 |
| metal abc transporter permease | F126LOC_RS11025 | Not Available | Positive | 2512137 - 2513000 | 30623.5 |
| metal abc transporter permease | F126LOC_RS11030 | Not Available | Positive | 2512997 - 2513854 | 30812.3 |
| fructosamine kinase family protein | F126LOC_RS11035 | Not Available | Positive | 2514251 - 2515111 | 33059.0 |
| ynib family protein | F126LOC_RS11040 | Not Available | Negative | 2515199 - 2515747 | 20577.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
