Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptide peptidase sppa | F126LOC_RS10745 | Not Available | Positive | 2438995 - 2440845 | 67450.5 |
| asparaginase | F126LOC_RS10750 | Not Available | Positive | 2441079 - 2442098 | 37049.3 |
| bifunctional nicotinamidase/pyrazinamidase | F126LOC_RS10755 | Not Available | Positive | 2442117 - 2442764 | 23337.6 |
| yeac family protein | F126LOC_RS10760 | Not Available | Negative | 2442816 - 2443094 | 10487.7 |
| peptide-methionine (r)-s-oxide reductase msrb | F126LOC_RS10765 | Not Available | Negative | 2443231 - 2443650 | 15550.8 |
| glyceraldehyde-3-phosphate dehydrogenase | F126LOC_RS10770 | Not Available | Positive | 2443995 - 2444990 | 35490.4 |
| d-hexose-6-phosphate mutarotase | F126LOC_RS10775 | Not Available | Positive | 2445098 - 2445967 | 32404.3 |
| aldo/keto reductase | F126LOC_RS10780 | Not Available | Negative | 2446044 - 2446895 | 31648.3 |
| mipa/ompv family protein | F126LOC_RS10785 | Not Available | Negative | 2447054 - 2447803 | 27501.1 |
| protein kinase yeag | F126LOC_RS10790 | Not Available | Positive | 2448259 - 2450193 | 74222.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
