Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein tripeptide/oligopeptide abc transporter atp binding protein oppf | F126LOC_RS10645 | Not Available | Negative | 2415747 - 2416781 | 38337.8 |
| abc transporter atp-binding protein | F126LOC_RS10650 | Not Available | Negative | 2416778 - 2417773 | 36646.0 |
| oligopeptide abc transporter permease oppc | F126LOC_RS10655 | Not Available | Negative | 2417785 - 2418693 | 33181.1 |
| oligopeptide abc transporter permease oppb | F126LOC_RS10660 | Not Available | Negative | 2418705 - 2419625 | 33380.0 |
| oligopeptide abc transporter substrate-binding protein oppa | F126LOC_RS10665 | Not Available | Negative | 2419679 - 2421316 | 61337.4 |
| oligopeptide abc transporter substrate-binding protein oppa | F126LOC_RS10670 | Not Available | Negative | 2421508 - 2423106 | 60149.9 |
| bifunctional acetaldehyde-coa/alcohol dehydrogenase | F126LOC_RS10675 | Not Available | Positive | 2424189 - 2426864 | 96505.0 |
| thymidine kinase | F126LOC_RS10680 | Not Available | Negative | 2427019 - 2427615 | 22142.5 |
| histone-like nucleoid-structuring protein h-ns | F126LOC_RS10685 | Not Available | Positive | 2428279 - 2428686 | 15362.3 |
| utp--glucose-1-phosphate uridylyltransferase galu | F126LOC_RS10690 | Not Available | Negative | 2428833 - 2429744 | 33169.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
