Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein ompw | F126LOC_RS10595 | Not Available | Negative | 2407207 - 2407839 | 23026.5 |
| ycic family protein | F126LOC_RS10600 | Not Available | Positive | 2408190 - 2408942 | 26667.1 |
| septation protein a | F126LOC_RS10605 | Not Available | Positive | 2409142 - 2409711 | 21755.3 |
| acyl-coa thioester hydrolase ycia | F126LOC_RS10610 | Not Available | Positive | 2409731 - 2410153 | 15209.3 |
| tonb system transport protein tonb | F126LOC_RS10615 | Not Available | Negative | 2410256 - 2411014 | 27843.6 |
| ycii family protein | F126LOC_RS10620 | Not Available | Positive | 2411280 - 2411576 | 10646.7 |
| tar ligand binding domain-containing protein | F126LOC_RS10625 | Not Available | Positive | 2411708 - 2413381 | 61230.3 |
| yciy family protein | F126LOC_RS10630 | Not Available | Negative | 2413469 - 2413645 | 7481.07 |
| cardiolipin synthase | F126LOC_RS10635 | Not Available | Positive | 2413836 - 2415296 | 55221.7 |
| hi1450 family dsdna-mimic protein | F126LOC_RS10640 | Not Available | Positive | 2415352 - 2415675 | 12369.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
