Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide abc transporter periplasmic-binding protein dppa | F126LOC_RS00275 | Not Available | Positive | 57171 - 58778 | 60177.5 |
| dipeptide abc transporter permease dppb | F126LOC_RS00280 | Not Available | Positive | 59010 - 60029 | 37402.4 |
| dipeptide abc transporter permease dppc | F126LOC_RS00285 | Not Available | Positive | 60043 - 60945 | 32291.4 |
| dipeptide abc transporter atp-binding protein | F126LOC_RS00290 | Not Available | Positive | 60959 - 61939 | 35896.7 |
| dipeptide abc transporter atp-binding subunit dppf | F126LOC_RS00295 | Not Available | Positive | 61936 - 62946 | 37613.6 |
| alpha/beta hydrolase | F126LOC_RS00300 | Not Available | Negative | 63016 - 63456 | 16782.2 |
| macro domain-containing protein | F126LOC_RS00305 | Not Available | Negative | 63574 - 64368 | 29969.2 |
| rhs repeat-associated core domain-containing protein | F126LOC_RS00310 | Not Available | Negative | 64325 - 68530 | 155738.0 |
| dcrb-related protein | F126LOC_RS00315 | Not Available | Negative | 68548 - 68988 | 16343.0 |
| type vi secretion system tip protein vgrg | F126LOC_RS00320 | Not Available | Negative | 69065 - 70924 | 67959.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
