Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase rnm | F126LOC_RS10545 | Not Available | Negative | 2394777 - 2395661 | 32151.6 |
| glycosyltransferase | F126LOC_RS10550 | Not Available | Negative | 2395777 - 2397135 | 52288.6 |
| arac family transcriptional regulator | F126LOC_RS10555 | Not Available | Positive | 2397930 - 2398967 | 39985.0 |
| anthranilate synthase component 1 | F126LOC_RS10560 | Not Available | Positive | 2399271 - 2400833 | 57769.2 |
| glutamine amidotransferase-related protein | F126LOC_RS10565 | Not Available | Positive | 2400833 - 2401411 | 20782.2 |
| anthranilate phosphoribosyltransferase | F126LOC_RS10570 | Not Available | Positive | 2401495 - 2402493 | 35317.3 |
| bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpf | F126LOC_RS10575 | Not Available | Positive | 2402501 - 2403868 | 49883.5 |
| tryptophan synthase subunit beta | F126LOC_RS10580 | Not Available | Positive | 2403882 - 2405075 | 42872.6 |
| tryptophan synthase subunit alpha | F126LOC_RS10585 | Not Available | Positive | 2405075 - 2405881 | 28791.5 |
| oligogalacturonate-specific porin kdgm family protein | F126LOC_RS10590 | Not Available | Positive | 2406267 - 2406995 | 27243.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
