Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease iii | F126LOC_RS10495 | Not Available | Positive | 2382468 - 2383103 | 23384.4 |
| dipeptide/tripeptide permease dtpa | F126LOC_RS10500 | Not Available | Positive | 2383791 - 2385281 | 53991.2 |
| hth-type transcriptional regulator cysb | F126LOC_RS10505 | Not Available | Negative | 2385411 - 2386385 | 35942.2 |
| type i dna topoisomerase | F126LOC_RS10510 | Not Available | Negative | 2386766 - 2389366 | 97523.2 |
| ycin family protein | F126LOC_RS10515 | Not Available | Positive | 2389736 - 2390005 | 10276.2 |
| protease sohb | F126LOC_RS10520 | Not Available | Negative | 2390081 - 2391127 | 38730.1 |
| ycik family oxidoreductase | F126LOC_RS10525 | Not Available | Positive | 2391484 - 2392245 | 27577.3 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | F126LOC_RS10530 | Not Available | Positive | 2392264 - 2392854 | 21947.2 |
| 23s rrna pseudouridine(2605) synthase rlub | F126LOC_RS10535 | Not Available | Negative | 2392935 - 2393819 | 33412.3 |
| l-threonylcarbamoyladenylate synthase | F126LOC_RS10540 | Not Available | Negative | 2393989 - 2394609 | 22966.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
