Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arabinose abc transporter substrate-binding protein | F126LOC_RS10445 | Not Available | Negative | 2371514 - 2372497 | 35443.9 |
| ribulokinase | F126LOC_RS10450 | Not Available | Positive | 2372870 - 2374555 | 61119.6 |
| l-arabinose isomerase | F126LOC_RS10455 | Not Available | Positive | 2374593 - 2376098 | 55878.3 |
| transcription modulator ydgt | F126LOC_RS10460 | Not Available | Positive | 2376388 - 2376603 | 8247.87 |
| electron transport complex subunit rsxa | F126LOC_RS10465 | Not Available | Positive | 2376820 - 2377401 | 21072.0 |
| electron transport complex subunit rsxb | F126LOC_RS10470 | Not Available | Positive | 2377401 - 2377979 | 20553.8 |
| electron transport complex subunit rsxc | F126LOC_RS10475 | Not Available | Positive | 2377972 - 2380071 | 75498.6 |
| electron transport complex subunit rsxd | F126LOC_RS10480 | Not Available | Positive | 2380072 - 2381127 | 38443.9 |
| electron transport complex subunit rsxg | F126LOC_RS10485 | Not Available | Positive | 2381138 - 2381767 | 22647.1 |
| electron transport complex subunit e | F126LOC_RS10490 | Not Available | Positive | 2381764 - 2382471 | 24786.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
