Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-6-phosphate isomerase | F126LOC_RS10395 | Not Available | Positive | 2359573 - 2360745 | 42894.1 |
| ydga family protein | F126LOC_RS10400 | Not Available | Positive | 2360834 - 2362393 | 55963.2 |
| arsenic resistance protein | F126LOC_RS10405 | Not Available | Positive | 2362495 - 2363472 | 34714.1 |
| adenosine deaminase | F126LOC_RS10410 | Not Available | Positive | 2363594 - 2364610 | 37273.5 |
| sgcj/ecac family oxidoreductase | F126LOC_RS10415 | Not Available | Negative | 2364690 - 2365154 | 17053.1 |
| bile acid:sodium symporter family protein | F126LOC_RS10420 | Not Available | Negative | 2365397 - 2366389 | 35596.0 |
| oxidoreductase | F126LOC_RS10425 | Not Available | Negative | 2366718 - 2367764 | 38350.8 |
| arabinose operon transcriptional regulator arac | F126LOC_RS10430 | Not Available | Negative | 2367879 - 2368811 | 35881.1 |
| l-arabinose abc transporter permease arah | F126LOC_RS10435 | Not Available | Negative | 2368874 - 2369860 | 34337.3 |
| l-arabinose abc transporter atp-binding protein arag | F126LOC_RS10440 | Not Available | Negative | 2369879 - 2371402 | 55570.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
