Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1283 family protein | F126LOC_RS10345 | Not Available | Positive | 2349011 - 2349361 | 13126.3 |
| hypothetical protein | F126LOC_RS10350 | Not Available | Positive | 2349499 - 2350116 | 22900.6 |
| duf1161 domain-containing protein | F126LOC_RS10355 | Not Available | Positive | 2350221 - 2350520 | 10215.0 |
| mdr family mfs transporter | F126LOC_RS10360 | Not Available | Negative | 2350582 - 2352069 | 53586.1 |
| dethiobiotin synthase | F126LOC_RS10365 | Not Available | Negative | 2352172 - 2352837 | 23940.2 |
| rok family transcriptional regulator | F126LOC_RS10370 | Not Available | Negative | 2352971 - 2354188 | 44368.8 |
| lysr family transcriptional regulator | F126LOC_RS10375 | Not Available | Negative | 2354489 - 2355385 | 33216.5 |
| mfs transporter | F126LOC_RS10380 | Not Available | Positive | 2355500 - 2356768 | 45109.1 |
| dna replication terminus site-binding protein | F126LOC_RS10385 | Not Available | Positive | 2356937 - 2357872 | 35599.2 |
| class ii fumarate hydratase | F126LOC_RS10390 | Not Available | Negative | 2357936 - 2359333 | 50344.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
