Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aromatic amino acid dmt transporter yddg | F126LOC_RS10295 | Not Available | Positive | 2337833 - 2338744 | 32053.0 |
| tautomerase ppta | F126LOC_RS10300 | Not Available | Negative | 2338766 - 2338996 | 8738.3 |
| hypothetical protein | F126LOC_RS10305 | Not Available | Positive | 2339232 - 2340149 | 34655.9 |
| tyrosyl-trna deacylase | F126LOC_RS10310 | Not Available | Positive | 2340178 - 2342016 | 68707.2 |
| mbl fold metallo-hydrolase | F126LOC_RS10315 | Not Available | Positive | 2342223 - 2342999 | 28401.0 |
| glxa family transcriptional regulator | F126LOC_RS10320 | Not Available | Positive | 2343045 - 2344007 | 36033.9 |
| mannosyl-3-phosphoglycerate phosphatase-related protein | F126LOC_RS10325 | Not Available | Positive | 2344211 - 2345065 | 31634.6 |
| glycosyl transferase | F126LOC_RS10330 | Not Available | Positive | 2345067 - 2346284 | 46276.9 |
| pyridoxal phosphate-dependent aminotransferase | F126LOC_RS10335 | Not Available | Positive | 2346599 - 2347783 | 42835.7 |
| bifunctional nadp-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase ydfg | F126LOC_RS10340 | Not Available | Positive | 2347991 - 2348740 | 26853.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
