Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | F126LOC_RS22350 | Not Available | Positive | 2328367 - 2328573 | 8279.92 |
| hypothetical protein | F126LOC_RS10250 | Not Available | Negative | 2328693 - 2329139 | 16477.8 |
| duf4145 domain-containing protein | F126LOC_RS10255 | Not Available | Negative | 2329233 - 2329958 | 26843.0 |
| mbl fold metallo-hydrolase | F126LOC_RS10260 | Not Available | Positive | 2330303 - 2331289 | 35437.0 |
| lysr family transcriptional regulator | F126LOC_RS10265 | Not Available | Positive | 2331302 - 2332213 | 33338.4 |
| vf530 family dna-binding protein | F126LOC_RS10270 | Not Available | Positive | 2332336 - 2332623 | 10568.5 |
| glycoside hydrolase family 10 protein | F126LOC_RS10275 | Not Available | Positive | 2332629 - 2333921 | 48223.4 |
| hypothetical protein | F126LOC_RS10280 | Not Available | Negative | 2333986 - 2334213 | 8429.9 |
| diaminobutyrate--2-oxoglutarate transaminase | F126LOC_RS10285 | Not Available | Positive | 2334730 - 2336115 | 49883.4 |
| pyridoxal phosphate-dependent decarboxylase family protein | F126LOC_RS10290 | Not Available | Positive | 2336125 - 2337621 | 54765.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
