Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS10205 | Not Available | Positive | 2315071 - 2315391 | 12178.2 |
| alpha/beta hydrolase | F126LOC_RS10210 | Not Available | Positive | 2316164 - 2317006 | 31401.3 |
| alpha/beta hydrolase | F126LOC_RS10215 | Not Available | Negative | 2317017 - 2317160 | 5539.37 |
| avast type 1 anti-phage system protein avs1c | F126LOC_RS10220 | Not Available | Negative | 2317188 - 2317436 | 9351.37 |
| hypothetical protein | F126LOC_RS10225 | Not Available | Negative | 2317444 - 2321475 | 150197.0 |
| is1 family transposase | F126LOC_RS10230 | Not Available | Positive | 2322221 - 2322915 | 26563.3 |
| hnh endonuclease signature motif containing protein | F126LOC_RS10235 | Not Available | Negative | 2323079 - 2324656 | 57981.2 |
| alpha/beta hydrolase | F126LOC_RS22345 | Not Available | Negative | 2325035 - 2325121 | 3096.85 |
| hypothetical protein | F126LOC_RS10240 | Not Available | Negative | 2325373 - 2326056 | 26461.5 |
| aipr family protein | F126LOC_RS10245 | Not Available | Negative | 2325983 - 2327386 | 53962.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
