Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS10145 | Not Available | Positive | 2299453 - 2301819 | 89146.3 |
| hypothetical protein | F126LOC_RS10150 | Not Available | Positive | 2301819 - 2302250 | 16235.0 |
| hypothetical protein | F126LOC_RS22340 | Not Available | Positive | 2302320 - 2303021 | 26334.4 |
| hypothetical protein | F126LOC_RS10165 | Not Available | Negative | 2303118 - 2303792 | 25427.3 |
| dna helicase uvrd | F126LOC_RS10175 | Not Available | Negative | 2304383 - 2305405 | 39519.2 |
| atp-dependent nuclease | F126LOC_RS10180 | Not Available | Negative | 2305390 - 2306952 | 59629.7 |
| hypothetical protein | F126LOC_RS10185 | Not Available | Positive | 2307272 - 2311108 | 146158.0 |
| hypothetical protein | F126LOC_RS10190 | Not Available | Positive | 2311361 - 2311591 | 8949.73 |
| is3 family transposase | F126LOC_RS10195 | Not Available | Negative | 2311844 - 2313207 | 52498.4 |
| hypothetical protein | F126LOC_RS10200 | Not Available | Negative | 2313491 - 2314459 | 36502.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
