Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b562 | F126LOC_RS10095 | Not Available | Positive | 2289246 - 2289641 | 14019.8 |
| tetr/acrr family transcriptional regulator | F126LOC_RS10100 | Not Available | Positive | 2289746 - 2290300 | 20713.8 |
| mfs transporter | F126LOC_RS10105 | Not Available | Positive | 2290437 - 2291633 | 41801.1 |
| gnat family n-acetyltransferase | F126LOC_RS10110 | Not Available | Positive | 2291770 - 2292270 | 18373.0 |
| methyl-accepting chemotaxis protein | F126LOC_RS10115 | Not Available | Positive | 2292427 - 2294400 | 70936.5 |
| hth-type transcriptional regulator argp | F126LOC_RS10120 | Not Available | Positive | 2294624 - 2295472 | 31199.4 |
| duf3811 domain-containing protein | F126LOC_RS10125 | Not Available | Negative | 2295514 - 2295780 | 10402.3 |
| nuclear transport factor 2 family protein | F126LOC_RS10130 | Not Available | Positive | 2295937 - 2296272 | 12505.8 |
| site-specific integrase | F126LOC_RS10135 | Not Available | Positive | 2296523 - 2297917 | 53618.5 |
| site-specific integrase | F126LOC_RS10140 | Not Available | Positive | 2297904 - 2299469 | 58702.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
