Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | F126LOC_RS10045 | Not Available | Positive | 2275620 - 2276939 | 48644.2 |
| superoxide dismutase family protein | F126LOC_RS10050 | Not Available | Negative | 2277006 - 2277530 | 17825.4 |
| sam-dependent methyltransferase | F126LOC_RS10055 | Not Available | Negative | 2277584 - 2278813 | 47329.5 |
| duf1365 domain-containing protein | F126LOC_RS10060 | Not Available | Negative | 2278810 - 2279535 | 28120.1 |
| nuclear transport factor 2 family protein | F126LOC_RS10065 | Not Available | Negative | 2279617 - 2280096 | 18559.2 |
| putative virulence factor | F126LOC_RS10070 | Not Available | Negative | 2280352 - 2282814 | 92237.1 |
| virulence factor srfb | F126LOC_RS10075 | Not Available | Negative | 2282811 - 2285798 | 112499.0 |
| srfa family protein | F126LOC_RS10080 | Not Available | Negative | 2285801 - 2287213 | 50114.1 |
| expansin exlx1 family cellulose-binding protein | F126LOC_RS10085 | Not Available | Negative | 2287502 - 2288191 | 25303.3 |
| osmc family protein | F126LOC_RS10090 | Not Available | Positive | 2288511 - 2288939 | 15097.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
