Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sirb2 family protein | F126LOC_RS09995 | Not Available | Positive | 2264142 - 2264543 | 15043.0 |
| invasion regulator sirb1 | F126LOC_RS10000 | Not Available | Positive | 2264546 - 2265355 | 30602.8 |
| 3-deoxy-8-phosphooctulonate synthase | F126LOC_RS10005 | Not Available | Positive | 2265431 - 2266285 | 30771.3 |
| duf1471 family protein ydgh | F126LOC_RS10010 | Not Available | Negative | 2266370 - 2267323 | 34508.3 |
| re/si-specific nad(p)(+) transhydrogenase subunit alpha | F126LOC_RS10015 | Not Available | Positive | 2267903 - 2269432 | 54587.4 |
| re/si-specific nad(p)(+) transhydrogenase subunit beta | F126LOC_RS10020 | Not Available | Positive | 2269443 - 2270831 | 48701.9 |
| universal stress protein uspe | F126LOC_RS10025 | Not Available | Negative | 2270971 - 2271921 | 35687.0 |
| fumarate/nitrate reduction transcriptional regulator fnr | F126LOC_RS10030 | Not Available | Negative | 2272112 - 2272858 | 27765.7 |
| methylated-dna--[protein]-cysteine s-methyltransferase | F126LOC_RS10035 | Not Available | Negative | 2273152 - 2273679 | 19583.4 |
| gfo/idh/moca family oxidoreductase | F126LOC_RS10040 | Not Available | Positive | 2274213 - 2275508 | 48849.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
