Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | F126LOC_RS09945 | Not Available | Negative | 2253719 - 2254918 | 42052.4 |
| redox-regulated atpase ychf | F126LOC_RS09950 | Not Available | Negative | 2255219 - 2256310 | 39677.4 |
| aminoacyl-trna hydrolase | F126LOC_RS09955 | Not Available | Negative | 2256440 - 2257027 | 21234.8 |
| stress-induced protein ychh | F126LOC_RS09960 | Not Available | Positive | 2257467 - 2257736 | 10295.8 |
| ribose-phosphate diphosphokinase | F126LOC_RS09965 | Not Available | Negative | 2258102 - 2259049 | 34365.5 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | F126LOC_RS09970 | Not Available | Negative | 2259187 - 2260059 | 31997.2 |
| lipoprotein insertase outer membrane protein lolb | F126LOC_RS09975 | Not Available | Negative | 2260063 - 2260686 | 23749.4 |
| glutamyl-trna reductase | F126LOC_RS09980 | Not Available | Positive | 2260919 - 2262175 | 46363.8 |
| peptide chain release factor 1 | F126LOC_RS09985 | Not Available | Positive | 2262209 - 2263291 | 40416.6 |
| peptide chain release factor n(5)-glutamine methyltransferase | F126LOC_RS09990 | Not Available | Positive | 2263291 - 2264136 | 30653.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
