Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | F126LOC_RS09895 | Not Available | Negative | 2242640 - 2243785 | 43434.9 |
| rna ligase family protein | F126LOC_RS09900 | Not Available | Negative | 2243791 - 2244675 | 33576.0 |
| hypothetical protein | F126LOC_RS09905 | Not Available | Positive | 2245173 - 2245769 | 21695.7 |
| mbl fold metallo-hydrolase | F126LOC_RS09910 | Not Available | Positive | 2246014 - 2247084 | 40536.1 |
| transketolase family protein | F126LOC_RS09915 | Not Available | Negative | 2247191 - 2248192 | 35972.1 |
| transketolase | F126LOC_RS09920 | Not Available | Negative | 2248192 - 2249037 | 31070.7 |
| sdr family nad(p)-dependent oxidoreductase | F126LOC_RS09925 | Not Available | Negative | 2249053 - 2249802 | 25925.5 |
| mfs transporter | F126LOC_RS09930 | Not Available | Negative | 2249838 - 2251169 | 48406.0 |
| lysr substrate-binding domain-containing protein | F126LOC_RS09935 | Not Available | Positive | 2251457 - 2252377 | 34837.9 |
| slc13 family permease | F126LOC_RS09940 | Not Available | Negative | 2252556 - 2253656 | 40557.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
