Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol-phosphatase | F126LOC_RS09845 | Not Available | Positive | 2231958 - 2232758 | 29334.2 |
| voc family protein | F126LOC_RS09850 | Not Available | Positive | 2232808 - 2233194 | 13728.2 |
| metal-binding protein zint | F126LOC_RS09855 | Not Available | Negative | 2233385 - 2234071 | 25895.4 |
| zinc metallochaperone gtpase ziga | F126LOC_RS09860 | Not Available | Positive | 2234236 - 2235459 | 44883.3 |
| rhamnogalacturonan acetylesterase | F126LOC_RS09865 | Not Available | Positive | 2236103 - 2237959 | 66903.0 |
| zinc metallochaperone aztd | F126LOC_RS09870 | Not Available | Negative | 2238091 - 2239323 | 44111.2 |
| zinc abc transporter substrate-binding protein aztc | F126LOC_RS09875 | Not Available | Negative | 2239363 - 2240298 | 33274.5 |
| zinc abc transporter permease aztb | F126LOC_RS09880 | Not Available | Negative | 2240305 - 2241195 | 31644.4 |
| zinc abc transporter atp-binding protein azta | F126LOC_RS09885 | Not Available | Negative | 2241195 - 2241920 | 26112.5 |
| hypothetical protein | F126LOC_RS09890 | Not Available | Positive | 2242227 - 2242643 | 15861.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
