Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavin reductase | F126LOC_RS09795 | Not Available | Positive | 2219329 - 2219874 | 19048.4 |
| m20 peptidase aminoacylase family protein | F126LOC_RS09800 | Not Available | Negative | 2220059 - 2221255 | 43197.6 |
| llm class flavin-dependent oxidoreductase | F126LOC_RS09805 | Not Available | Positive | 2221681 - 2222661 | 35970.5 |
| clbs/dfsb family four-helix bundle protein | F126LOC_RS09810 | Not Available | Positive | 2222743 - 2223240 | 18875.7 |
| hypothetical protein | F126LOC_RS09815 | Not Available | Positive | 2223421 - 2223648 | 8183.49 |
| autotransporter domain-containing protein | F126LOC_RS09820 | Not Available | Positive | 2224061 - 2226013 | 70869.8 |
| is30 family transposase | F126LOC_RS09825 | Not Available | Negative | 2226056 - 2227216 | 44479.4 |
| laci family dna-binding transcriptional regulator | F126LOC_RS09830 | Not Available | Negative | 2227283 - 2228308 | 37235.7 |
| pts cellobiose/arbutin/salicin transporter subunit iibc | F126LOC_RS09835 | Not Available | Positive | 2228803 - 2230263 | 51239.9 |
| 6-phospho-beta-glucosidase | F126LOC_RS09840 | Not Available | Positive | 2230304 - 2231734 | 53600.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
