Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 43 protein | F126LOC_RS09700 | Not Available | Positive | 2196300 - 2197976 | 63359.3 |
| allophanate hydrolase | F126LOC_RS09705 | Not Available | Positive | 2198233 - 2200035 | 63587.6 |
| urea carboxylase | F126LOC_RS09710 | Not Available | Positive | 2200028 - 2203642 | 130852.0 |
| gntr family transcriptional regulator | F126LOC_RS09715 | Not Available | Positive | 2203715 - 2204503 | 30634.5 |
| urea abc transporter substrate-binding protein | F126LOC_RS09720 | Not Available | Positive | 2204500 - 2205768 | 46140.0 |
| urea abc transporter permease subunit urtb | F126LOC_RS09725 | Not Available | Positive | 2205843 - 2207414 | 56006.4 |
| urea abc transporter permease subunit urtc | F126LOC_RS09730 | Not Available | Positive | 2207426 - 2208502 | 38850.9 |
| urea abc transporter atp-binding protein urtd | F126LOC_RS09735 | Not Available | Positive | 2208579 - 2209367 | 29119.9 |
| urea abc transporter atp-binding subunit urte | F126LOC_RS09740 | Not Available | Positive | 2209369 - 2210067 | 25705.4 |
| hypothetical protein | F126LOC_RS09745 | Not Available | Negative | 2210316 - 2210711 | 13960.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
