Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbon-nitrogen hydrolase family protein | F126LOC_RS09650 | Not Available | Positive | 2183860 - 2184606 | 27270.0 |
| abc transporter substrate-binding protein | F126LOC_RS09655 | Not Available | Positive | 2185063 - 2186184 | 42158.1 |
| pectate lyase | F126LOC_RS09660 | Not Available | Negative | 2186399 - 2188105 | 63538.2 |
| oligogalacturonate-specific porin kdgm family protein | F126LOC_RS09665 | Not Available | Negative | 2188230 - 2188982 | 28414.8 |
| oligogalacturonate-specific porin kdgm family protein | F126LOC_RS09670 | Not Available | Negative | 2189115 - 2189933 | 31351.3 |
| type iii effector hrpk domain-containing protein | F126LOC_RS09675 | Not Available | Positive | 2190701 - 2192461 | 61828.0 |
| hypothetical protein | F126LOC_RS09680 | Not Available | Negative | 2192486 - 2192662 | 6657.46 |
| gfo/idh/moca family protein | F126LOC_RS09685 | Not Available | Positive | 2192808 - 2193815 | 37481.4 |
| helix-turn-helix domain-containing protein | F126LOC_RS09690 | Not Available | Negative | 2193829 - 2194725 | 34461.2 |
| mfs transporter | F126LOC_RS09695 | Not Available | Positive | 2194869 - 2196197 | 49202.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
