Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system paar protein | F126LOC_RS09600 | Not Available | Positive | 2154772 - 2155038 | 8415.93 |
| hypothetical protein | F126LOC_RS09605 | Not Available | Negative | 2155140 - 2155463 | 12098.3 |
| pectate lyase | F126LOC_RS09610 | Not Available | Negative | 2155465 - 2156946 | 47787.9 |
| avre-family type 3 secretion system effector | F126LOC_RS09615 | Not Available | Positive | 2157121 - 2162004 | 172956.0 |
| type iii secretion system chaperone | F126LOC_RS09620 | Not Available | Positive | 2162040 - 2162462 | 15500.0 |
| gntr family transcriptional regulator | F126LOC_RS09625 | Not Available | Negative | 2162483 - 2163148 | 24823.1 |
| shlb/fhac/hecb family hemolysin secretion/activation protein | F126LOC_RS09630 | Not Available | Positive | 2163484 - 2165148 | 62233.9 |
| hemagglutinin repeat-containing protein | F126LOC_RS22475 | Not Available | Positive | 2165195 - 2182621 | 600942.0 |
| imm63 family immunity protein | F126LOC_RS09640 | Not Available | Positive | 2182623 - 2183042 | 16177.1 |
| hypothetical protein | F126LOC_RS09645 | Not Available | Positive | 2183176 - 2183724 | 21120.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
